Index

A

adjust_dir() (spaceKLIP.database.Database method) adjust_spttype() (in module spaceKLIP.psflib) align_frames() (spaceKLIP.imagetools.ImageTools method) alignlsq() (in module spaceKLIP.utils) all_logging_disabled() (in module spaceKLIP.logging_tools) AnalysisTools (class in spaceKLIP.analysistools)

annotate_compass() (in module spaceKLIP.plotting) annotate_scale_bar() (in module spaceKLIP.plotting) annotate_secondary_axes_arcsec() (in module spaceKLIP.plotting) apply_masking_prechecks() (in module spaceKLIP.coron1pipeline) apply_rateint_outliers() (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP method) average_channels() (spaceKLIP.fnoise_clean.CleanFullFrame method)

B

bandpass (spaceKLIP.psf.JWST_PSF property) best_convfit_and_residuals() (in module spaceKLIP.analysistools) bg_minimize() (in module spaceKLIP.utils)

bg_subtract() (spaceKLIP.fnoise_clean.CleanSubarray method) blur_frames() (spaceKLIP.imagetools.ImageTools method) build_refdb() (in module spaceKLIP.psflib)

C

calc_bias() (spaceKLIP.expjumpramp.Covar method) calculate_alignment() (spaceKLIP.imagetools.ImageTools method) calculate_centers() (spaceKLIP.imagetools.ImageTools method) calculate_centers_binary() (spaceKLIP.imagetools.ImageTools method) calibrate_contrast() (spaceKLIP.analysistools.AnalysisTools method) channel_smooth_savgol() (in module spaceKLIP.fnoise_clean) chisqr_red() (in module spaceKLIP.utils) class_alias (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP attribute) (spaceKLIP.coron1pipeline.MaskGroupsStep attribute) (spaceKLIP.coron2pipeline.Coron2Pipeline_spaceKLIP attribute) (spaceKLIP.expjumpramp.ExperimentalJumpRampStep attribute) (spaceKLIP.fnoise_clean.kTCSubtractStep attribute) (spaceKLIP.fnoise_clean.OneOverfStep attribute) clean() (spaceKLIP.fnoise_clean.CleanFullFrame method) (spaceKLIP.fnoise_clean.CleanSubarray method) clean_background() (spaceKLIP.imagetools.ImageTools method) clean_bad_pixels() (spaceKLIP.imagetools.ImageTools method) CleanFullFrame (class in spaceKLIP.fnoise_clean) CleanSubarray (class in spaceKLIP.fnoise_clean)

coadd_frames() (spaceKLIP.imagetools.ImageTools method) compare_clean_methods() (in module spaceKLIP.plotting) compare_find_methods() (in module spaceKLIP.plotting) compModern() (in module spaceKLIP.plotting) config_stpipe_log() (in module spaceKLIP.utils) Coron1Pipeline_spaceKLIP (class in spaceKLIP.coron1pipeline) Coron2Pipeline_spaceKLIP (class in spaceKLIP.coron2pipeline) Coron3Pipeline_spaceKLIP (class in spaceKLIP.coron3pipeline) Covar (class in spaceKLIP.expjumpramp) crds_logging_disabled() (in module spaceKLIP.logging_tools) create_alldiffs2use() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) create_bkg_mask() (in module spaceKLIP.fnoise_clean) create_covar() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) create_database() (in module spaceKLIP.database) create_diffs() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) create_dq_ints() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) crop_frames() (spaceKLIP.imagetools.ImageTools method) crop_image() (in module spaceKLIP.utils) cube_fit() (in module spaceKLIP.utils) cube_outlier_detection() (in module spaceKLIP.utils)

D

Database (class in spaceKLIP.database) decode_simbad_sptype() (in module spaceKLIP.psflib) display_coron_dataset() (in module spaceKLIP.plotting) display_coron_image() (in module spaceKLIP.plotting) display_image_comparisons() (in module spaceKLIP.plotting)

do_pseudo_refpix() (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP method) do_refpix() (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP method) do_saturation() (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP method) download_files() (in module spaceKLIP.mast) download_mast() (in module spaceKLIP.psflib) draw_compass_mpl() (in module spaceKLIP.wcs_utils)

E

estimate_extended() (in module spaceKLIP.analysistools) estimate_padding_for_shift() (in module spaceKLIP.utils)

ExperimentalJumpRampStep (class in spaceKLIP.expjumpramp) extract_companions() (spaceKLIP.analysistools.AnalysisTools method)

F

fill_masked_reads() (spaceKLIP.expjumpramp.Ramp_Result method) filter (spaceKLIP.psf.JWST_PSF property) find_bad_pixels() (spaceKLIP.imagetools.ImageTools method) find_bad_pixels_custom() (spaceKLIP.imagetools.ImageTools method) find_bad_pixels_gradient() (spaceKLIP.imagetools.ImageTools method) find_bad_pixels_sigclip() (spaceKLIP.imagetools.ImageTools method) find_bad_pixels_timeints() (spaceKLIP.imagetools.ImageTools method) find_nircam_centers() (spaceKLIP.imagetools.ImageTools method) fit() (spaceKLIP.fnoise_clean.CleanFullFrame method) (spaceKLIP.fnoise_clean.CleanSubarray method)

fit_ramps() (in module spaceKLIP.expjumpramp) fit_slopes_to_ramp_data() (in module spaceKLIP.fnoise_clean) fix_bad_pixels() (spaceKLIP.imagetools.ImageTools method) fix_bad_pixels_astrofix() (spaceKLIP.imagetools.ImageTools method) fix_bad_pixels_interp2d() (spaceKLIP.imagetools.ImageTools method) fix_bad_pixels_localmed() (spaceKLIP.imagetools.ImageTools method) fix_bad_pixels_medfilt() (spaceKLIP.imagetools.ImageTools method) fix_bad_pixels_timemed() (spaceKLIP.imagetools.ImageTools method) flatten_model (spaceKLIP.fnoise_clean.CleanFullFrame property) fov_pix (spaceKLIP.psf.JWST_PSF property)

G

gaussian_kernel() (in module spaceKLIP.utils) gen_offsetpsf() (in module spaceKLIP.psf) gen_psf() (spaceKLIP.psf.JWST_PSF method) gen_psf_idl() (spaceKLIP.psf.JWST_PSF method) get_bkg() (in module spaceKLIP.fnoise_clean) get_compass_info() (in module spaceKLIP.wcs_utils) get_dqmask() (in module spaceKLIP.utils) get_filter_info() (in module spaceKLIP.utils) get_mast_filename() (in module spaceKLIP.mast) get_nrcmask_from_apname() (in module spaceKLIP.utils)

get_offsetpsf() (in module spaceKLIP.psf) get_pce_info() (in module spaceKLIP.utils) get_pyklip_filepaths() (in module spaceKLIP.pyklippipeline) get_sciref_files() (in module spaceKLIP.psflib) get_siaf() (in module spaceKLIP.utils) get_stellar_magnitudes() (in module spaceKLIP.starphot) get_subarray_ref() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) get_tp_comsubst() (in module spaceKLIP.utils) get_transmission() (in module spaceKLIP.psf) get_visitid() (in module spaceKLIP.utils) getramps() (in module spaceKLIP.expjumpramp)

H

hpf() (spaceKLIP.imagetools.ImageTools method)

I

image_mask (spaceKLIP.psf.JWST_PSF property) ImageTools (class in spaceKLIP.imagetools) imshift() (in module spaceKLIP.utils)

inject_and_recover() (in module spaceKLIP.analysistools) inject_companions() (spaceKLIP.imagetools.ImageTools method) interpret_dq_value() (in module spaceKLIP.utils) isnone() (in module spaceKLIP.psflib)

J

jumpramp_column() (in module spaceKLIP.expjumpramp)

jumpramp_column_helper() (in module spaceKLIP.expjumpramp) JWST_PSF (class in spaceKLIP.psf)

K

kTCSubtractStep (class in spaceKLIP.fnoise_clean)

L

load_pce_data() (in module spaceKLIP.utils) load_plt_style() (in module spaceKLIP.plotting)

load_refdb() (in module spaceKLIP.psflib) loss_function() (in module spaceKLIP.analysistools)

M

make_asn_file() (in module spaceKLIP.coron3pipeline) make_clean_class() (in module spaceKLIP.fnoise_clean) mask_helper() (in module spaceKLIP.fnoise_clean) mask_jumps() (in module spaceKLIP.expjumpramp) mask_NDsquares() (spaceKLIP.imagetools.ImageTools method) MaskGroupsStep (class in spaceKLIP.coron1pipeline) module spaceKLIP.analysistools spaceKLIP.classpsfsubpipeline spaceKLIP.coron1pipeline spaceKLIP.coron2pipeline spaceKLIP.coron3pipeline spaceKLIP.database spaceKLIP.expjumpramp spaceKLIP.fnoise_clean spaceKLIP.imagetools spaceKLIP.logging_tools spaceKLIP.mast spaceKLIP.plotting spaceKLIP.psf spaceKLIP.psflib spaceKLIP.pyklippipeline spaceKLIP.starphot spaceKLIP.utils spaceKLIP.wcs_utils

N

name (spaceKLIP.psf.JWST_PSF property) nfclean_mulitprocess_helper() (in module spaceKLIP.fnoise_clean)

not_isnone() (in module spaceKLIP.psflib) nx (spaceKLIP.fnoise_clean.CleanSubarray property) ny (spaceKLIP.fnoise_clean.CleanSubarray property)

O

OneOverfStep (class in spaceKLIP.fnoise_clean)

oversample (spaceKLIP.psf.JWST_PSF property)

P

pad_frames() (spaceKLIP.imagetools.ImageTools method) persistence_trimming() (spaceKLIP.imagetools.ImageTools method) plot_chains() (in module spaceKLIP.plotting) plot_contrast_calibrated() (in module spaceKLIP.plotting) plot_contrast_images() (in module spaceKLIP.plotting) plot_contrast_raw() (in module spaceKLIP.plotting) plot_fm_psf() (in module spaceKLIP.plotting) plot_injected_locs() (in module spaceKLIP.plotting) plot_subimages() (in module spaceKLIP.plotting) pop_pxar_kw() (in module spaceKLIP.utils) prepare_group_masking_advanced() (in module spaceKLIP.coron1pipeline) prepare_group_masking_basic() (in module spaceKLIP.coron1pipeline) prepare_group_masking_custom() (in module spaceKLIP.coron1pipeline)

print_obs() (spaceKLIP.database.Database method) print_red() (spaceKLIP.database.Database method) print_src() (spaceKLIP.database.Database method) proc_CubeModel() (spaceKLIP.fnoise_clean.OneOverfStep method) proc_ImageModel() (spaceKLIP.fnoise_clean.OneOverfStep method) proc_RampModel() (spaceKLIP.fnoise_clean.OneOverfStep method) process() (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP method) (spaceKLIP.coron1pipeline.MaskGroupsStep method) (spaceKLIP.coron2pipeline.Coron2Pipeline_spaceKLIP method) (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) (spaceKLIP.fnoise_clean.kTCSubtractStep method) (spaceKLIP.fnoise_clean.OneOverfStep method) produce_ramp_images() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) pupil_mask (spaceKLIP.psf.JWST_PSF property)

Q

query_coron_datasets() (in module spaceKLIP.mast)

quick_plot() (spaceKLIP.fnoise_clean.OneOverfStep method)

R

Ramp_Result (class in spaceKLIP.expjumpramp) raw_contrast() (spaceKLIP.analysistools.AnalysisTools method) read_jwst_s012_data() (spaceKLIP.database.Database method) read_jwst_s3_data() (spaceKLIP.database.Database method) read_jwst_s4_data() (spaceKLIP.database.Database method) read_msk() (in module spaceKLIP.utils) read_obs() (in module spaceKLIP.utils) read_red() (in module spaceKLIP.utils) read_spec_file() (in module spaceKLIP.starphot) read_votable() (in module spaceKLIP.starphot) recenter_frames() (spaceKLIP.imagetools.ImageTools method) recenter_jens() (in module spaceKLIP.psf)

recenterlsq() (in module spaceKLIP.utils) remove_frames() (spaceKLIP.imagetools.ImageTools method) replace_nans() (spaceKLIP.imagetools.ImageTools method) resample_frames() (spaceKLIP.imagetools.ImageTools method) rth_to_xy() (spaceKLIP.psf.JWST_PSF method) run_obs() (in module spaceKLIP.classpsfsubpipeline) (in module spaceKLIP.coron1pipeline) (in module spaceKLIP.coron2pipeline) (in module spaceKLIP.coron3pipeline) (in module spaceKLIP.pyklippipeline) run_single_file() (in module spaceKLIP.coron1pipeline) (in module spaceKLIP.coron2pipeline) run_step() (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP method)

S

set_default_style() (in module spaceKLIP.plotting) set_dnu_to_nan() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) set_params() (in module spaceKLIP.mast) set_surrounded_pixels() (in module spaceKLIP.utils) setup_output() (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP method) shift_frames() (spaceKLIP.imagetools.ImageTools method) spaceKLIP.analysistools module spaceKLIP.classpsfsubpipeline module spaceKLIP.coron1pipeline module spaceKLIP.coron2pipeline module spaceKLIP.coron3pipeline module spaceKLIP.database module spaceKLIP.expjumpramp module spaceKLIP.fnoise_clean module spaceKLIP.imagetools module spaceKLIP.logging_tools module spaceKLIP.mast module

spaceKLIP.plotting module spaceKLIP.psf module spaceKLIP.psflib module spaceKLIP.pyklippipeline module spaceKLIP.starphot module spaceKLIP.utils module spaceKLIP.wcs_utils module spec (spaceKLIP.coron1pipeline.Coron1Pipeline_spaceKLIP attribute) (spaceKLIP.coron1pipeline.MaskGroupsStep attribute) (spaceKLIP.coron2pipeline.Coron2Pipeline_spaceKLIP attribute) (spaceKLIP.expjumpramp.ExperimentalJumpRampStep attribute) (spaceKLIP.fnoise_clean.kTCSubtractStep attribute) (spaceKLIP.fnoise_clean.OneOverfStep attribute) subtract_background() (spaceKLIP.imagetools.ImageTools method) subtract_background_godoy() (spaceKLIP.imagetools.ImageTools method) subtract_median() (spaceKLIP.imagetools.ImageTools method) subtract_nircam_coron_background() (spaceKLIP.imagetools.ImageTools method) subtractlsq() (in module spaceKLIP.utils) summarize() (spaceKLIP.database.Database method) suppress_stdout() (in module spaceKLIP.logging_tools)

T

tickFont() (in module spaceKLIP.plotting)

U

update_db_sptypes() (in module spaceKLIP.psflib) update_frames_with_nans_from_nanmask() (spaceKLIP.imagetools.ImageTools method) update_groupdq() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) update_miri_offsets() (spaceKLIP.imagetools.ImageTools method)

update_nircam_centers() (spaceKLIP.imagetools.ImageTools method) update_obs() (spaceKLIP.database.Database method) update_src() (spaceKLIP.database.Database method) use_coeff (spaceKLIP.psf.JWST_PSF property)

W

weighted_average() (spaceKLIP.expjumpramp.ExperimentalJumpRampStep method) write_fitpsf_images() (in module spaceKLIP.utils)

write_msk() (in module spaceKLIP.utils) write_obs() (in module spaceKLIP.utils) write_starfile() (in module spaceKLIP.utils)